Added this to my "Post Build" step, it replaces all .exe + .dll files with a single combined .exe. It also keeps the debugging .pdb file intact:

rem Create a single .exe that combines the root .exe and all subassemblies.
"$(SolutionDir)ILMerge\ILMerge.exe" /out:"$(TargetDir)$(TargetName).all.exe" "$(TargetDir)$(TargetName).exe" "$(TargetDir)*.dll" /target:exe /targetplatform:v4,C:\Windows\Microsoft.NET\Framework64\v4.0.30319 /wildcards
rem Remove all subassemblies.
del *.dll
rem Remove all .pdb files (except the new, combined pdb we just created).
ren "$(TargetDir)$(TargetName).all.pdb" "$(TargetName).all.pdb.temp"
del *.pdb
ren "$(TargetDir)$(TargetName).all.pdb.temp" "$(TargetName).all.pdb"
rem Delete the original, non-combined .exe.
del "$(TargetDir)$(TargetName).exe"
rem Rename the combined .exe and .pdb to the original name we started with.
ren "$(TargetDir)$(TargetName).all.pdb" "$(TargetName).pdb"
ren "$(TargetDir)$(TargetName).all.exe" "$(TargetName).exe"
exit 0

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